Chapter 6 Population tasks
alleleCounts | Estimating population allele counts |
alleleFreq | Estimating population allele frequencies |
ancestralAlleles | Writing FASTA-file with ancestral alleles |
calculateF2 | Calculate F2 between samples, and within/between populations |
geneticDist | Estimating the genetic distance between individuals |
inbreeding | Estimating the inbreeding coefficient |
majorMinor | Estimating major and minor alles |
printGLF | Printing a GLF file to screen |
saf | Estimating Site Allele Frequencies |