| allelicDepth |
Writing genotype likelihoods to a GLF file |
| call |
Calling genotypes |
| createMask |
Creating a mask BED file |
| estimateErrors |
Estimating PMD pattern and Sequencing Errors |
| GLF |
Writing genotype likelihoods to a GLF file |
| HKY85 |
Estimating HKY85 genotype Distribution |
| mutationLoad |
Estimating mutation load across the genome |
| pileup |
Printing pileup from BAM file |
| PSMC |
Generating a PSMC Input file probabilistically |
| theta |
Estimating heterozygosity (theta) |
| thetaRatio |
Estimate ratio in heterozygosity (theta) between genomic regions |