2.3 Typical workflow chart
A typical workflow to make a PCA a population with low-depth sequencing data would cover the following steps:
| Individual 1 | Individual 2 | … | Individual N |
|---|---|---|---|
| BAM | BAM | … | BAM |
| mergeOverlappingReads | mergeOverlappingReads | … | mergeOverlappingReads |
| BAMDiagnostics | BAMDiagnostics | … | BAMDiagnostics |
| estimateErrors | estimateErrors | … | estimateErrors |
| theta | theta | … | theta |
| HKY85 | HKY85 | … | HKY85 |
| GLF | GLF | … | GLF |
| majorMinor |